Milk and Milk products is an excellent option as a food delivery vehicle for vital ingredient as it carries many other health benefits. However, milk and milk products are poor source of omega 3 fatty acids and devoid of dietary fibre. Nowadays, consumers trend is towards westernized products with much emphasis on pizza cheese, therefore plant based key ingredients like flaxseed oil, algal oil as the source of omega 3 fatty acids and inulin as a dietary fibre were added in the form of emulsion and further dried encapsulated powder to provide more functionality to the consumers, keeping well the taste attributes. From the sensory studies, it could be concluded that incorporation levels of emulsion and encapsulated powder @ 6 and 3 per cent respectively, in the milk as well as in the curd during pizza cheese preparation were acceptable by the panelists. Furthermore, it was found that only 40per cent of nutraceuticals were retained in the pizza cheese, whereas a humongous i.e., 60 per cent were lost in the whey analyzing the samples. From this study, it was concluded that retained vital ingredients present in the pizza cheese were not up to the recommended level to provide appropriate health benefits. Hence, the pizza cheese (processed) is an alternative option to retain the expected vital ingredients to provide the health benefits.